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Manufacturing Challenges for Biosimilars: Complex Production and Why They're Harder Than Generics

Manufacturing Challenges for Biosimilars: Complex Production and Why They're Harder Than Generics
By Vincent Kingsworth 6 Jan 2026

When you think of generic drugs, you probably picture a small, cheap pill that does the same thing as the brand-name version. It’s simple: same chemistry, same effect. But biosimilars aren’t like that. They’re not copies-they’re near-matches. And making them is one of the most complex tasks in modern medicine.

Why Biosimilars Can’t Be Made Like Regular Generics

Small-molecule generics are made in labs using chemical reactions. You mix the right ingredients, follow the steps, and you get the exact same molecule every time. It’s like baking cookies from a recipe-you get the same taste and texture every batch.

Biosimilars are different. They’re made inside living cells-usually Chinese hamster ovary cells or bacteria. These cells are like tiny factories that produce huge, tangled protein molecules. The final product isn’t just a chemical formula. It’s a living system’s output. Even tiny changes in temperature, pH, or nutrient levels can alter the molecule’s shape, folding, or sugar attachments. That’s why you can’t just reverse-engineer the reference drug like you would with aspirin or metformin.

The industry calls this the "process defines the product" rule. It means the way you grow the cells, feed them, stir them, and purify the protein determines what the final drug looks like. If you change the process even slightly, the molecule changes. And if the molecule changes, the drug might not work the same way-or worse, it might trigger an immune reaction.

The Glycosylation Problem: Sugar Molecules That Change Everything

One of the biggest headaches in biosimilar manufacturing is glycosylation. That’s the process where sugar chains (called glycans) attach to the protein backbone. These sugars aren’t just decoration. They control how long the drug lasts in your body, how well it binds to its target, and whether your immune system sees it as foreign.

Think of it like a key. The protein part is the blade. The sugars are the teeth. If the teeth are wrong, the key won’t turn in the lock-even if the blade looks perfect. And here’s the catch: glycosylation depends on the cell line, the nutrients in the culture media, the oxygen levels, the speed of the bioreactor, even the type of water used. A difference of 0.1% in sugar structure can change how fast the drug clears from the bloodstream.

Originator companies spend years optimizing this. Biosimilar makers have to guess it. They don’t get the recipe. They get a vial of the finished drug and have to reverse-engineer the entire production process from scratch. It’s like trying to rebuild a Ferrari by only driving one for a week and taking photos.

Scaling Up Is Like Moving a Kitchen from a Studio Apartment to a Restaurant

Making a few liters of biosimilar in a lab is one thing. Making 20,000 liters for thousands of patients is another. When you scale up, the physics change. In a small bioreactor, oxygen mixes evenly. In a giant one, it doesn’t. Stirring too fast can shear the delicate protein. Too slow, and cells starve. Temperature gradients form. Bubbles form differently. Cells behave differently.

This isn’t just theory. In 2021, a major biosimilar candidate failed Phase III trials because the scaled-up batch had a 12% difference in glycosylation compared to the lab batch. The company had to scrap the entire process and start over-losing over $200 million.

Smaller manufacturers struggle even more. Installing a 2,000-liter bioreactor requires new infrastructure, specialized staff, and millions in capital. Many don’t have the space, the budget, or the regulatory experience to make the jump from pilot to commercial scale.

Contrast between a small lab bioreactor and a giant industrial tank, showing scaling challenges in biosimilar production.

Cold Chain Nightmares and the Cost of One Broken Bag

Biosimilars are fragile. They can’t be left out of the fridge. They can’t be shaken. They can’t be exposed to light or air for too long. The entire supply chain-from the bioreactor to the hospital-is a cold chain. One broken refrigerated truck. One torn storage bag. One delayed shipment. And you lose an entire batch worth hundreds of thousands of dollars.

Unlike generics, which can sit on a shelf for years, biosimilars have tight expiration windows. Some need to be used within 48 hours of being filled. That’s why many companies now use single-use bags and closed systems. These aren’t just convenient-they’re essential. They reduce contamination risk, eliminate cleaning validation (which takes weeks), and cut down on human error.

But even then, mistakes happen. In 2023, a European biosimilar manufacturer lost a $45 million batch because a filling line malfunction caused air bubbles to form in the vials. The protein degraded. The batch was unusable. No one got sick. But no one got the drug either.

Regulatory Hurdles: Proving You’re Similar Enough

The FDA and EMA don’t just want you to say your biosimilar is similar. They want proof. And not just one kind of proof. You need:

  • Structural analysis: mass spectrometry, NMR, chromatography to prove the protein is the same shape
  • Functional assays: does it bind to the target receptor? Does it trigger the same immune response?
  • Preclinical studies: animal tests for toxicity and pharmacokinetics
  • Clinical trials: head-to-head studies in patients to prove safety and efficacy
And it’s not the same everywhere. The EU is stricter on clinical data. The U.S. allows more reliance on analytical data. China has its own pathway. You can’t just make one version and sell it globally. You need tailored dossiers for each market. That means more labs, more staff, more time, more money.

The average biosimilar development cost is $100-$300 million. That’s 10 to 30 times more than a small-molecule generic. And the approval process takes 7-10 years.

A fragile biosimilar bag in a broken cold chain, with AI sensors monitoring expiration clocks in retro style.

How the Industry Is Fighting Back

Manufacturers aren’t giving up. They’re getting smarter.

Single-use technology is now standard. Bioreactors, filters, and tubing are all disposable. No more cleaning validation. No more cross-contamination. Faster changeovers. This lets one facility produce multiple biosimilars without reconfiguring the whole line.

Process analytical technology (PAT) lets companies monitor the process in real time. Sensors track pH, temperature, dissolved oxygen, and even protein quality as the batch runs. If something drifts, the system adjusts automatically. It’s like having a co-pilot that never sleeps.

AI and machine learning are being used to predict how changes in culture media or mixing speed will affect glycosylation. One company in Germany reduced batch failures by 40% in two years by training an AI on 12 years of production data.

Continuous manufacturing is the next frontier. Instead of making one batch at a time, you run the whole process nonstop-like a conveyor belt. This reduces variability, cuts production time, and lowers costs. The FDA is encouraging it. But it’s hard to implement. You need flawless integration of every step, from cell culture to purification to filling.

The Market Is Growing-but Only for the Strong

The global biosimilars market was worth $7.9 billion in 2022. By 2030, it’s expected to hit $58.1 billion. That’s a 28% annual growth rate. The reason? Big biologics like Humira, Enbrel, and Rituxan are losing patents. Insurers and governments want cheaper options.

But here’s the catch: only 15 companies worldwide have successfully brought a biosimilar to market. Most are big players like Amgen, Novartis, or Samsung Bioepis. Smaller firms are getting squeezed. The cost of compliance, the risk of failure, the need for cutting-edge labs-it’s too much for many.

The result? Consolidation. Bigger companies are buying up smaller ones with niche tech. New entrants need deep pockets, expert teams, and a tolerance for failure. It’s not a market for hobbyists.

What’s Next for Biosimilars?

The next wave of biosimilars won’t be simple monoclonal antibodies. They’ll be complex: bispecific antibodies, antibody-drug conjugates, fusion proteins. These have multiple protein chains, extra chemical attachments, and even more steps in purification. One mistake in refolding a chain, and the whole molecule misfires.

The future belongs to manufacturers who treat biosimilar production like a high-stakes engineering challenge-not just a chemistry problem. It’s about controlling chaos. It’s about turning biological variability into predictable consistency.

The payoff? Cheaper drugs for patients. Better access. Lower healthcare costs.

But it won’t happen by accident. It will happen because someone figured out how to make a living cell behave like a perfectly tuned machine.

Why can’t biosimilars be exact copies like generics?

Biosimilars are made from living cells, not chemical reactions. Even tiny changes in the manufacturing process-like temperature or nutrient levels-alter the protein’s shape, sugar attachments, or folding. Unlike generics, which are chemically identical to the original, biosimilars are "highly similar" but not identical. The body can detect even small differences, so regulators require extensive testing to prove they work the same way.

What’s the biggest technical hurdle in making biosimilars?

Glycosylation-the attachment of sugar molecules to the protein-is the biggest challenge. These sugars control how the drug behaves in the body: how long it lasts, how it binds to targets, and whether it triggers immune reactions. Because glycosylation depends on the cell’s environment, and manufacturers don’t know the originator’s exact process, replicating the exact sugar profile is like solving a puzzle with half the pieces missing.

Why is scaling up biosimilar production so difficult?

In small lab bioreactors, conditions are easy to control. In large commercial ones, oxygen doesn’t mix evenly, temperature gradients form, and cell stress changes. What works in a 10-liter tank might fail in a 2,000-liter one. Many companies have lost millions because their scaled-up batches didn’t match the lab version. It’s not just bigger-it’s fundamentally different physics.

How do regulators ensure biosimilars are safe?

Regulators like the FDA and EMA require a "totality of evidence" approach. That means deep analytical testing (mass spectrometry, chromatography), functional assays (does it bind correctly?), animal studies, and often clinical trials comparing the biosimilar directly to the original drug. You can’t just claim similarity-you have to prove it across dozens of quality attributes.

Are biosimilars cheaper than the original biologics?

Yes-but not because they’re easy to make. Biosimilars cost 15-35% less than the original biologic, even though their development and manufacturing cost 10-30 times more than a small-molecule generic. The savings come from competition and regulatory pathways that reduce the need for full clinical trials. But the high cost of production means only well-funded companies can enter the market.

What’s the future of biosimilar manufacturing?

The future lies in continuous manufacturing, AI-driven process control, and single-use systems. Instead of making batches, companies are moving toward constant production lines that reduce variability. AI predicts quality issues before they happen. Single-use tech cuts contamination risk and speeds up changeovers. Complex biosimilars like antibody-drug conjugates will push these technologies even further, making manufacturing more precise-but also more expensive.

Tags: biosimilars manufacturing biosimilar production challenges biologics vs generics glycosylation in biosimilars biosimilar scale-up
  • January 6, 2026
  • Vincent Kingsworth
  • 8 Comments
  • Permalink

RESPONSES

Andrew N
  • Andrew N
  • January 7, 2026 AT 14:07

Biosimilars aren't just hard to make-they're basically impossible to replicate perfectly. The whole 'process defines the product' thing? That's not a nuance, that's a dealbreaker. You can't just tweak a recipe and get the same result. One wrong pH level and boom, your protein folds wrong and your immune system starts hunting it like a virus. It's not chemistry, it's alchemy with a 90% failure rate.

LALITA KUDIYA
  • LALITA KUDIYA
  • January 8, 2026 AT 12:15

gotta say i never realized how much biology is just... chaos in a tank. sugar chains controlling how long a drug lasts? wild. also why do we even call them 'biosimilars' if they're not even close to copies? like calling a Picasso painting a 'similar version' of a stick figure

Poppy Newman
  • Poppy Newman
  • January 9, 2026 AT 05:27

the glycosylation thing is wild 😱 i mean, imagine your key works fine... until the teeth get a little bent. you don’t even notice until you’re stuck outside at 3am. that’s what these drugs are doing to patients without anyone realizing. we need way more transparency.

Katrina Morris
  • Katrina Morris
  • January 10, 2026 AT 05:03

really appreciate this breakdown. i work in rural health and seeing biosimilars come online could change everything for people who can't afford biologics. it's not just science-it's justice. even if it's messy, we gotta keep pushing for it

Sai Ganesh
  • Sai Ganesh
  • January 10, 2026 AT 16:00

in india we have a few biosimilar makers now. they're not perfect but they're cheaper. the government should subsidize the tech, not just the drugs. otherwise only big pharma wins and patients still lose.

Ayodeji Williams
  • Ayodeji Williams
  • January 10, 2026 AT 16:44

wait so you're telling me a $200M drug fails because of a BUBBLE? that's insane. why not just use robots? or better yet, why not make the cells do it themselves? like, if they're already making the protein, why can't they just make the right sugar too? this whole thing feels like a glitch in the matrix

Rachel Steward
  • Rachel Steward
  • January 12, 2026 AT 05:39

Let’s be real: the entire biosimilar industry is a regulatory shell game. You spend $300 million to prove you’re 'similar enough' so you can sell it for 30% less than the original-while the original drug company still makes billions because they own the patents longer than anyone remembers. It’s capitalism dressed up as healthcare reform. The real winners? Lawyers and investors. The losers? Patients who still can’t access the drug because the hospital’s formulary won’t budge.

And don’t get me started on 'continuous manufacturing.' It sounds cool until you realize it means one tiny sensor failure takes down 20,000 liters of product. That’s not innovation. That’s gambling with human lives.

AI predicting glycosylation? Cute. But AI doesn’t know what a human immune system will do. We’re still guessing. We’re just guessing faster now with more data.

And the fact that only 15 companies can do this? That’s not progress. That’s a cartel with a lab coat. If you think this market is about affordability, you’re not paying attention to who’s writing the rules.

Meanwhile, patients are told to be grateful for 'similar' drugs while their insurance denies the original because it’s 'too expensive.' But the original was developed with public funding. The biosimilar? Built on stolen reverse-engineering. Who’s really being exploited here?

It’s not science. It’s a legal and financial obstacle course with a drug at the end.

Aparna karwande
  • Aparna karwande
  • January 12, 2026 AT 17:34

western pharma thinks they own biology. we in india have been making biosimilars for decades with half the budget and twice the grit. you think we don’t know how to control a bioreactor? we fixed our own supply chains while you were busy patenting oxygen. now you want to lecture us on glycosylation? please. your 'expensive' tech is our daily bread. stop acting like you invented medicine.

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